PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 567aa    MW: 64283.6 Da    PI: 4.7872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12313356755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  XP_009121197.1 313 LAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 356
                     68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-1710148IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.75E-14305358No hitNo description
PROSITE profilePS5088816.488306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17309371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-16312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16313369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10313356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MESSMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWIG CCCGGTQLIE ENGTEEFSFE  60
GCRDVMFHHP RTKSCEILAH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP GFMQETICTR  120
VLIPIPGGLV ELFATRHVAE DQNVVDFVMG NCNMLMDETV TINMMVADEV ESKPYGMLSG  180
DIHQKGSKDE EMMNLTSPYD ISTDQMRLNF LPPMSEYEAQ QHLKVKSDYN HQDLGYLPEN  240
GSKEMMGMNP FSTEDGMSVM GEPSLLVNEQ QIANDKEMNE SGTGSDCSDQ IDDEDDPKYK  300
KKTGKHSQAK NLLAERRRRK KLNDRLYALR SLVPRITKLD RASILGDAIN YVKELQNEAK  360
ELQDELEENS ETEDGANRQQ GGVSLNGTVV TGFHPGLSCN SSVPNLKQDV DLENANDKGQ  420
EMEPQVDVAQ LDGREFFVKV ICEYKPGGFT RLMEALDSLG LEVTNANTTR FLSLVSNVFK  480
VEKTDSEMVP AEHVRNSLLE ITRNTSRGWH DDQMATGSIQ NEKNEVDYQH YDDNHHHSGH  540
HHLNDHQMNH SAQHHHHHQH INHYQNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299320KKKTGKHSQAKNLLAERRRRKK
2314321ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.3501e-40bud| flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121197.10.0PREDICTED: transcription factor ABORTED MICROSPORES
RefseqXP_009121198.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLM4CCS30.0M4CCS3_BRARP; Uncharacterized protein
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein